| MirGeneDB ID | Pma-Mir-205-o1 |
|---|
| Family name |
MIR-205 (all species) |
|---|
| Seed |
CCUUCAU |
|---|
| Species |
Sea Lamprey (Petromyzon marinus) |
|---|
| MiRBase ID |
pma-mir-205a
|
|---|
| Paralogues |
Pma-Mir-205-o2
|
|---|
| Orthologues |
Cmi-Mir-205-P1
Lch-Mir-205-P1
Loc-Mir-205-P1
Mal-Mir-205-P1-v1
Mal-Mir-205-P1-v2
Sto-Mir-205-P1
Xla-Mir-205-P1a
Xla-Mir-205-P1b
Xtr-Mir-205-P1
|
|---|
| Node of Origin (locus) |
P. marinus
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046082.1: 10653082-10653140 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCUCCAUGCAAUUCCCACGAUUUCCGACGUCCUUCAUUCCACCGGAGUCUGUCAGGCUUAAACGACAGAUUUCGGGGGAUGAAGUGCAUCGGUCGUAGGGUAAAGCGACGGAGCUUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCUCCAUGCAAUUCCC-----| UUU C UC A CAGGC
ACGA CCGA G CUUCAUUCC CCGGAGUCUGU U
UGCU GGCU C GAAGUAGGG GGCUUUAGACA U
CUUUCGAGGCAGCGAAAUGGGA^ --- A GU - GCAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Pma-Mir-205-o1_5p |
| mirBase accession | MIMAT0019517 |
|---|
| Sequence |
0- UCCUUCAUUCCACCGGAGUCUGU -23
Get sequence
|
|---|
| Star sequence |
Pma-Mir-205-o1_3p* |
| mirBase accession | MIMAT0019518 |
|---|
| Sequence |
37- AGAUUUCGGGGGAUGAAGUGCA -59
Get sequence
|
|---|
