MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-205-o1

Family name MIR-205 (all species)
Seed CCUUCAU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-205a
Paralogues Pma-Mir-205-o2 
Orthologues Cmi-Mir-205-P1  Lch-Mir-205-P1  Loc-Mir-205-P1  Mal-Mir-205-P1-v1  Mal-Mir-205-P1-v2  Sto-Mir-205-P1  Xla-Mir-205-P1a  Xla-Mir-205-P1b  Xtr-Mir-205-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046082.1: 10653082-10653140 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUCCAUGCAAUUCCCACGAUUUCCGACGUCCUUCAUUCCACCGGAGUCUGUCAGGCUUAAACGACAGAUUUCGGGGGAUGAAGUGCAUCGGUCGUAGGGUAAAGCGACGGAGCUUUC
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Structure
        10             20        30        40        50         
UCCUCCAUGCAAUUCCC-----|   UUU    C UC         A           CAGGC 
                      ACGA   CCGA G  CUUCAUUCC CCGGAGUCUGU     U
                      UGCU   GGCU C  GAAGUAGGG GGCUUUAGACA     U
CUUUCGAGGCAGCGAAAUGGGA^   ---    A GU         -           GCAAA 
       110       100           90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-205-o1_5p

mirBase accessionMIMAT0019517
Sequence
0- UCCUUCAUUCCACCGGAGUCUGU -23
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Star sequence

Pma-Mir-205-o1_3p*

mirBase accessionMIMAT0019518
Sequence
37- AGAUUUCGGGGGAUGAAGUGCA -59
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