Mir-30-P1o5

MirGeneDB ID

Pma-Mir-30-P1o5

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-30b

Paralogues

Pma-Mir-30-P1o2 Pma-Mir-30-P1o3a Pma-Mir-30-P1o3b Pma-Mir-30-P1o4 Pma-Mir-30-P2o3 Pma-Mir-30-P2o4 Pma-Mir-30-P2o5

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046083.1: 11307703-11307768 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1o5)

Mir-30-P2o5 NC_046083.1: 11295448-11295510 [-] UCSC Ensembl
Mir-30-P1o5 NC_046083.1: 11307703-11307768 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCGCGCACAGCAAUGGACAGGGUGGGAGCUGUAAACAUCCCUGACUGGAAGCUGGGAGCACUUGCUGCGGCAGCUUUCGCCCGGAUGUUUGCUGCUGCCAUCUGUCAAGGGCUUCAAGGAGAAGC

Get precursor sequence

Structure

        10           20        30        40        50        60   
UCCGCGCACAGCAAUGG---|    G   G   U          CUGAC        GGGAGCAC 
                    ACAGG UGG AGC GUAAACAUCC     UGGAAGCU        U
                    UGUCU ACC UCG CGUUUGUAGG     GCUUUCGA        U
CGAAGAGGAACUUCGGGAAC^    -   G   U          CCC--        CGGCGUCG 
    120       110        100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-30-P1o5_5p

mirBase accession

MIMAT0019424

Sequence

0- UGUAAACAUCCCUGACUGGAAGCU -24

Get sequence

Star sequence

Pma-Mir-30-P1o5_3p*

mirBase accession

None

Sequence

44- CUUUCGCCCGGAUGUUUGCUGC -66

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