MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-30-P2o5

Family name MIR-30 (all species)
Seed GUAAACA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-30f-2
Paralogues Pma-Mir-30-P1o2  Pma-Mir-30-P1o3a  Pma-Mir-30-P1o3b  Pma-Mir-30-P1o4  Pma-Mir-30-P1o5  Pma-Mir-30-P2o3  Pma-Mir-30-P2o4 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046083.1: 11295448-11295510 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2o5)		 Mir-30-P2o5 NC_046083.1: 11295448-11295510 [-] UCSC Ensembl
Mir-30-P1o5 NC_046083.1: 11307703-11307768 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCGUUGAAGAAAGCCGAGCUGCAGGCAGUGUAAACACCCUACACUCUCAGCUGCUGACUGACAGAGGAAGCUGGGAGAGGGUGCUUACCUUGCCUGGCUUGGGCGAGCAUCACUGCUGCCU
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Structure
        10            20        30        40        50        60  
UGUCGUUGAAGAAAGCC----|   UG       U    A      ACA         GCUGACU 
                     GAGC  CAGGCAG GUAA CACCCU   CUCUCAGCU       G
                     UUCG  GUCCGUU CAUU GUGGGA   GAGGGUCGA       A
UCCGUCGUCACUACGAGCGGG^   --       C    C      ---         AGGAGAC 
 120       110       100          90        80           70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-30-P2o5_5p
mirBase accessionMIMAT0019430
Sequence 
0- UGUAAACACCCUACACUCUCAGCU -24
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Star sequence

Pma-Mir-30-P2o5_3p* (predicted)
mirBase accessionNone
Sequence 
42- CUGGGAGAGGGUGCUUACCUU -63
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