Mir-196-P3

MirGeneDB ID

Rno-Mir-196-P3

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-196c

Paralogues

Rno-Mir-196-P1c Rno-Mir-196-P1d Rno-Mir-196-P4

Orthologues

Aca-Mir-196-P3 Ami-Mir-196-P3 Bta-Mir-196-P3 Cfa-Mir-196-P3 Cin-Mir-196 Cja-Mir-196-P3 Cli-Mir-196-P3 Cmi-Mir-196-P3 Cpi-Mir-196-P3 Cpo-Mir-196-P3 Dno-Mir-196-P3 Dre-Mir-196-P3a Eca-Mir-196-P3 Gga-Mir-196-P3 Gja-Mir-196-P3 Hsa-Mir-196-P3 Laf-Mir-196-P3 Lch-Mir-196-P3 Loc-Mir-196-P3 Mal-Mir-196-P3a Mdo-Mir-196-P3 Mml-Mir-196-P3 Mmr-Mir-196-P3 Mmu-Mir-196-P3 Neu-Mir-196-P3 Ocu-Mir-196-P3 Pab-Mir-196-P3 Pbv-Mir-196-P3 Pma-Mir-196-o3 Sha-Mir-196-P3 Spt-Mir-196-P3 Sto-Mir-196-P3 Tni-Mir-196-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(rn6)

chr10: 84113588-84113647 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAGCUUGAACUGGGACUGCUGAGUGAAGUAGGUAGUUUCGUGUUGUUGGGCCUGGCUUUCUGAACACAACAACACCAAACCACCUGAUUCACUGCAGUUACUGCUUCUUGCUUAGCUG

Get precursor sequence

Structure

        10            20        30        40        50         
UGGAGCUUGAACUGGGA----|   UG      G     A    C         GGCCUGGC 
                     CUGC  AGUGAA UAGGU GUUU GUGUUGUUG        U
                     GACG  UCACUU GUCCA CAAA CACAACAAC        U
GUCGAUUCGUUCUUCGUCAUU^   --      A     C    C         ACAAGUCU 
.       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-196-P3_5p

mirBase accession

MIMAT0005303

Sequence

0- UAGGUAGUUUCGUGUUGUUGGG -22

Get sequence

Proposed targets

microrna.org: MIMAT0005303
TargetScanVert: rno-miR-196c-5p
miRDB: MIMAT0005303

Star sequence

Rno-Mir-196-P3_3p*

mirBase accession

MIMAT0017299

Sequence

38- CAACAACACCAAACCACCUGAU -60

Get sequence

Proposed targets

TargetScanVert: rno-miR-196c-3p
miRDB: MIMAT0017299