MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-196c
Paralogues Rno-Mir-196-P1c  Rno-Mir-196-P1d  Rno-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmu-Mir-196-P3  Ocu-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(rn6)		 chr10: 84113588-84113647 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAGCUUGAACUGGGACUGCUGAGUGAAGUAGGUAGUUUCGUGUUGUUGGGCCUGGCUUUCUGAACACAACAACACCAAACCACCUGAUUCACUGCAGUUACUGCUUCUUGCUUAGCUG
Get precursor sequence
Structure
        10            20        30        40        50         
UGGAGCUUGAACUGGGA----|   UG      G     A    C         GGCCUGGC 
                     CUGC  AGUGAA UAGGU GUUU GUGUUGUUG        U
                     GACG  UCACUU GUCCA CAAA CACAACAAC        U
GUCGAUUCGUUCUUCGUCAUU^   --      A     C    C         ACAAGUCU 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-196-P3_5p
mirBase accessionMIMAT0005303
Sequence 
0- UAGGUAGUUUCGUGUUGUUGGG -22
Get sequence
Proposed targets microrna.org: MIMAT0005303
TargetScanVert: rno-miR-196c-5p
miRDB: MIMAT0005303
Star sequence

Rno-Mir-196-P3_3p*
mirBase accessionMIMAT0017299
Sequence 
38- CAACAACACCAAACCACCUGAU -60
Get sequence
Proposed targets TargetScanVert: rno-miR-196c-3p
miRDB: MIMAT0017299