MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-28-P3

Family name MIR-28 (all species)
Seed AGGAGCU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-708
Paralogues Rno-Mir-28-P1  Rno-Mir-28-P2 
Orthologues Bta-Mir-28-P3  Cfa-Mir-28-P3  Cpo-Mir-28-P3  Dno-Mir-28-P3  Ete-Mir-28-P3  Hsa-Mir-28-P3  Mml-Mir-28-P3  Mmu-Mir-28-P3  Ocu-Mir-28-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chr1: 161221256-161221324 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGCUGUGUUUGAAAUGGUGACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUAGAUGACUUGCACUUGAACACAACUAGACUGUGAGCUUCUAGAGGGCAGGGGCCUUACCCUAGUCAUCUCUCU
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Structure
        10          20        30        40        50        60    
ACAGCUGUGUUUGAAAU--|  GA        A           A     C  GGGGUAGAUGAC 
                   GGU  CUGCCCUC AGGAGCUUACA UCUAG UG            \
                   CCG  GACGGGAG UCUUCGAGUGU AGAUC AC            U
UCUCUCUACUGAUCCCAUU^  GG        A           C     A  ACAAGUUCACGU 
       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-28-P3_5p

mirBase accessionMIMAT0005331
Sequence
0- AAGGAGCUUACAAUCUAGCUGGG -23
Get sequence
Proposed targets microrna.org: MIMAT0005331
TargetScanVert: rno-miR-708-5p
miRDB: MIMAT0005331
Co-mature sequence

Rno-Mir-28-P3_3p

mirBase accessionMIMAT0005332
Sequence
46- CAACUAGACUGUGAGCUUCUAGA -69
Get sequence
Proposed targets microrna.org: MIMAT0005332
TargetScanVert: rno-miR-708-3p
miRDB: MIMAT0005332