Mir-506-P2

MirGeneDB ID

Rno-Mir-506-P2

Family name

MIR-506 (all species)

Seed

UUGGUAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-547

Paralogues

Rno-Mir-506-P1 Rno-Mir-506-P6 Rno-Mir-506-P7 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P19 Rno-Mir-506-P20 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25 Rno-Mir-506-P26 Rno-Mir-506-P28

Orthologues

Bta-Mir-506-P2f Bta-Mir-506-P2g Bta-Mir-506-P2h Cfa-Mir-506-P2d Cfa-Mir-506-P2e Cpo-Mir-506-o2 Cpo-Mir-506-P2a Cpo-Mir-506-P2b Cpo-Mir-506-P2c Dno-Mir-506-P2 Hsa-Mir-506-P2 Mml-Mir-506-P2 Mmu-Mir-506-P2 Ocu-Mir-506-P2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 155338852-155338909 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P2)

Mir-506-P7 chrX: 155317221-155317277 [+] UCSC Ensembl
Mir-506-P2 chrX: 155338852-155338909 [+] UCSC Ensembl
Mir-506-P1 chrX: 155339151-155339208 [+] UCSC Ensembl
Mir-506-P6 chrX: 155344207-155344263 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUACCUUCAGUCACAUAGUGUGUGAUGUAUCACUUCAGGAUGUACCACCCAUUUAAUGGAAAAUAUGAUUGGUACUUCUUUAAGUGAGAUAAUGCACACUAACUGCCACGUCAAUACU

Get precursor sequence

Structure

        10          20        30        40        50        
CUACCUUCAGUCACAUA--|      A   A      C    U      CC  UUUAAU 
                   GUGUGUG UGU UCACUU AGGA GUACCA  CA      G
                   CACACGU AUA AGUGAA UUCU CAUGGU  GU      G
UCAUAACUGCACCGUCAAU^      A   G      U    U      UA  AUAAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-506-P2_5p*

mirBase accession

MIMAT0017368

Sequence

0- CACUUCAGGAUGUACCACCCA -21

Get sequence

Proposed targets

TargetScanVert: rno-miR-547-5p
miRDB: MIMAT0017368

Mature sequence

Rno-Mir-506-P2_3p

mirBase accession

MIMAT0012851

Sequence

37- AUUGGUACUUCUUUAAGUGAG -58

Get sequence

Proposed targets

microrna.org: MIMAT0012851
TargetScanVert: rno-miR-547-3p
miRDB: MIMAT0012851