MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-6715

Family name MIR-6715 (all species)
Seed CAGGCCG
Species Norway rat (Rattus norvegicus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-6715  Cfa-Mir-6715  Cpo-Mir-6715  Ete-Mir-6715  Hsa-Mir-6715  Mml-Mir-6715  Mmu-Mir-6715  Ocu-Mir-6715 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chr1: 275972856-275972911 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUAGUCAUGUGUUCUCUGGGCUGUGUCCACAGGCCGGCAGGUUUGAGCAUUUUGAUUGAAUUGUCAAACCAGGCGUGCCUGUGGACACAGCACUCACGGGCUCCUCCAGUGGCG
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Structure
        10        20          30        40         50       
CAAUAGUCAUGUGUUCUCUGG--               CG  A-|      G  UUUUG 
                       GCUGUGUCCACAGGC  GC  GGUUUGA CA     A
                       CGACACAGGUGUCCG  CG  CCAAACU GU     U
GCGGUGACCUCCUCGGGCACUCA               UG  GA^      -  UAAGU 
    110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Rno-Mir-6715_5p (predicted)

mirBase accessionNone
Sequence
0- ACAGGCCGGCAGGUUUGAGCA -21
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Co-mature sequence

Rno-Mir-6715_3p (predicted)

mirBase accessionNone
Sequence
35- UCAAACCAGGCGUGCCUGUGG -56
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