| MirGeneDB ID | Sha-Mir-12355 |
|---|
| Family name |
MIR-12355 (all species) |
|---|
| Seed |
CGGAGGU |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Mdo-Mir-12355
Neu-Mir-12355
|
|---|
| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(DEVIL_add) |
GL849755.1: 1249930-1249988 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUUCCUGGCUGUGGCUUGGACUAGAUGGCUGCGGAGGUCCGUUUCCACUCUGAAGUUAUGUGAUUCAGAGCUGGAAUGGACCUCAGAGGCCAUCUAGUCCCAUCUCCUCUUUGCACAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUUCCUGGCUGUGGCUU--| GCG U - AAGUUA
GGACUAGAUGGCU GAGGUCCGUU CCA CUCUG \
CCUGAUCUACCGG CUCCAGGUAA GGU GAGAC U
AGACACGUUUCUCCUCUAC^ AGA - C UUAGUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Mir-12355_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GCGGAGGUCCGUUUCCACUCUG -22
Get sequence
|
|---|
| Star sequence |
Sha-Mir-12355_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GAGCUGGAAUGGACCUCAGAGG -59
Get sequence
|
|---|
