Mir-194-P2

MirGeneDB ID

Sha-Mir-194-P2

Family name

MIR-194 (all species)

Seed

GUAACAG

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-194-P2 Ami-Mir-194-P2 Bta-Mir-194-P2 Cfa-Mir-194-P2 Cpi-Mir-194-P2 Cpo-Mir-194-P2 Dno-Mir-194-P2 Dre-Mir-194-P2a Dre-Mir-194-P2b Ete-Mir-194-P2 Gja-Mir-194-P2 Gmo-Mir-194-P2a Gmo-Mir-194-P2b Hsa-Mir-194-P2 Lch-Mir-194-P2 Loc-Mir-194-P2 Mal-Mir-194-P2a Mal-Mir-194-P2b Mml-Mir-194-P2 Mmu-Mir-194-P2 Mun-Mir-194-P2 Oan-Mir-194-P2 Ocu-Mir-194-P2 Pbv-Mir-194-P2 Rno-Mir-194-P2 Spt-Mir-194-P2 Sto-Mir-194-P2 Tni-Mir-194-P2a Tni-Mir-194-P2b Xla-Mir-194-P2c Xla-Mir-194-P2d Xtr-Mir-194-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

AFEY01099922_Mir-192-P1_Mir-194-P1: 2424-2481 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGAGGGGAGCCGCCGUGGCGCCCACCCCCUGUAACAGCAACUCCAUGUGGGACGGCUUCCUUCUUCCAGUGGGGGCGCUGUUACCUUGGGUGGGCAGCCCAGAUCCCGCAGAAAGAA

Get precursor sequence

Structure

        10         20         30        40        50         
AGGAGGGGAGCCGCCGU-   -|       CCU        AA      G    ACGGCU 
                  GGC GCCCACCC   GUAACAGC  CUCCAU UGGG      \
                  CCG CGGGUGGG   CAUUGUCG  GGGGUG ACCU      U
AAGAAAGACGCCCUAGAC   A^       UUC        CG      -    UCUUCC 
      110       100        90        80        70         60

Deep sequencing

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Comment

Not in assembly but in trace archive.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-194-P2_5p

mirBase accession

None

Sequence

0- UGUAACAGCAACUCCAUGUGGGA -23

Get sequence

Star sequence

Sha-Mir-194-P2_3p*

mirBase accession

None

Sequence

36- CCAGUGGGGGCGCUGUUACCUU -58

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