MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-7379

Family name MIR-7379 (all species)
Seed CUGGAUG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Mdo-Mir-7379 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)
GL867615.1: 435332-435388 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCAAAGAUUUGUGUUGAGGUAGUUUCUCUAUAUCACCCAUACAUCCAGAUAUAAUUGAAAAAUCUGGAUGCUUUGAUGGUGUAGAGACACUCCUUCAGACAGCAGCUCUGCUGAG
Get precursor sequence
Structure
        10          20        30        40         50        
CCUCAAAGAUUUGUGUU--|   U   U           CC  UA-         AUAAU 
                   GAGG AGU UCUCUAUAUCA  CA   CAUCCAGAU     \
                   CUUC UCA AGAGAUGUGGU  GU   GUAGGUCUA     U
GAGUCGUCUCGACGACAGA^   C   C           A-  UUC         AAAAG 
     110       100        90        80         70        60
Deep sequencing
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-7379_5p* (predicted)

mirBase accessionNone
Sequence
0- UAUAUCACCCAUACAUCCAGAUA -23
Get sequence
Mature sequence

Sha-Mir-7379_3p (predicted)

mirBase accessionNone
Sequence
34- UCUGGAUGCUUUGAUGGUGUAGA -57
Get sequence