| MirGeneDB ID | Sko-Mir-4835 |
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| Family name |
MIR-4835 (all species) |
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| Seed |
CAAGCAG |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-4835
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| Paralogues |
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| Orthologues |
Pfl-Mir-4835
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| Node of Origin (locus) |
Enteropneusta
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| Node of Origin (family) |
Enteropneusta
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Genome context
(Skow_1.1) |
NW_003137830.1: 154894-154952 [-]
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Precursor
(pre-Mir +30nt flank) |
UCUCCAAUCAACUGCUUGAUGUUCACUUUAAGGUGGCUGGACAGCUUGGUGUGUAAACAGAAUAUCAUCAAGCAGUCCAUCCAUCCUUGCAGUUAACAUUCAUUUCUACAAACUGAUAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCUCCAAUCAACUGCUU-- C U -| C A UGUAAA
GAUGUU ACU UAAGG UGG UGGAC GCUUGGUG C
UUACAA UGA GUUCC ACC ACCUG CGAACUAC A
GAUAGUCAAACAUCUUUAC U C U^ U A UAUAAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Sko-Mir-4835_5p* |
| mirBase accession | MIMAT0020051 |
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| Sequence |
0- AGGUGGCUGGACAGCUUGGUG -21
Get sequence
|
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| Mature sequence |
Sko-Mir-4835_3p |
| mirBase accession | MIMAT0020052 |
|---|
| Sequence |
37- UCAAGCAGUCCAUCCAUCCUUG -59
Get sequence
|
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