MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-279-P5

Family name MIR-279 (all species)
Seed GACUAGA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-61b
Paralogues Sme-Mir-279-P4 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Dma-Mir-279-o5  Dpu-Mir-279-o5  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000037_dd_Smes_g4_37: 4595299-4595354 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAUCAUUCCAAAGCGGCGAUUACACAGAAGAUCGUGUCGUUCUAGAUUACAUGGAUAUAUGUGACUAGAAUGUUCACCUUCUUUAGUAGAAUCCGCGAUCAUCUGGUCCCAUGC
Get precursor sequence
Structure
        10          20        30         40        50       
UGCAUCAUUCCAAAGCG-  -    AC  A     UC   U-|       A     UGG 
                  GC GAUU  AC GAAGA  GUG  CGUUCUAG UUACA   A
                  CG CUAA  UG UUUCU  CAC  GUAAGAUC AGUGU   U
CGUACCCUGGUCUACUAG  C    GA  A     UC   UU^       -     AUA 
    110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-279-P5_5p*
mirBase accessionMIMAT0012132
Sequence 
0- AGAUCGUGUCGUUCUAGAUUACA -23
Get sequence
Mature sequence

Sme-Mir-279-P5_3p
mirBase accessionMIMAT0011227
Sequence 
33- UGACUAGAAUGUUCACCUUCUUU -56
Get sequence