| MirGeneDB ID | Sme-Mir-29-o4 |
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| Family name |
MIR-29 (all species) |
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| Seed |
AGCACCA |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-746
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
Bilateria
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000203_dd_Smes_g4_203: 962314-962399 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUUAUCUUGAUAAUUCGCAUAACAUCUAGCCGGAUAAAUCCUGUGUGCAUUGAUAGAAAGUGAAAUGAUUUUAUUCAUAAGAUCUACCAUAUCUAGCACCAGGGUAUAUCGGGAUUGAAACGAACAUGAUCAUCAUGAAAUUAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70
UUUUAUCUUGAUAAUUCGCAUAACA--| UAG G A U AUUGAUAGAAAGUGAAAUGAUUU
UC CC GAUA AUCCUG GUGC \
AG GG CUAU UGGGAC CACG U
UUAUUAAAGUACUACUAGUACAAGCAA^ UUA G A - AUCUAUACCAUCUAGAAUACUUA
140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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| Star sequence |
Sme-Mir-29-o4_5p* |
| mirBase accession | MIMAT0012103 |
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| Sequence |
0- CCGGAUAAAUCCUGUGUGCAUUG -23
Get sequence
|
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| Mature sequence |
Sme-Mir-29-o4_3p |
| mirBase accession | MIMAT0003978 |
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| Sequence |
64- UAGCACCAGGGUAUAUCGGGAU -86
Get sequence
|
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