MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-87-o9

Family name MIR-87 (all species)
Seed UGAGCAA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-87b
Paralogues Sme-Mir-87-o8  Sme-Mir-87-o10  Sme-Mir-87-o11 
Orthologues
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000183_dd_Smes_g4_183: 1003279-1003349 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUAUUCAGUUUCAUUGAUGCGUUGAUGCUUCAUUCGAAAUUUUGCUCAAAUCCAUUUUGUUAAUAAUAAUUUUCGAUGGUGAGCAAAGCUUCAAAUGAGAUUUCACGGAAUUCGGUCUUCAUUGUUAUUA
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Structure
        10        20           30        40        50        60      
UUUAUUCAGUUUCAUUGAUG---|  U  UGC      C   A         AAU   UUUUGUUAAU 
                       CGU GA   UUCAUU GAA UUUUGCUCA   CCA          A
                       GCA CU   GAGUAA CUU GAAACGAGU   GGU          A
AUUAUUGUUACUUCUGGCUUAAG^  -  UUA      A   C         ---   AGCUUUUAAU 
 .       120       110        100        90           80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-87-o9_5p*

mirBase accessionMIMAT0012110
Sequence
0- UCAUUCGAAAUUUUGCUCAAAUCCA -25
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Mature sequence

Sme-Mir-87-o9_3p

mirBase accessionMIMAT0003990
Sequence
49- GUGAGCAAAGCUUCAAAUGAGA -71
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