MirGeneDB 2.1
MirGeneDB ID

Spt-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-135-P1  Spt-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)		 QEPC01004435.1: 755813-755873 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUAUCCUCGGUAAGCCUUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCUUAACUCAUGUAGGGCUGAAAGCCAUGGGCUACACAGAGGAAGACUCCACCUCCUUGGG
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Structure
        10           20        30        40        50        60
CUUAUCCUCGGUAAGCC---|    C                 UAU          UUGCUU 
                    UUCUG UGUGGUCUAUGGCUUUU   UCCUAUGUGA      U
                    GAGAC ACAUCGGGUACCGAAAG   GGGAUGUACU      U
GGGUUCCUCCACCUCAGAAG^    -                 UC-          CAAUUC 
 .       110       100         90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-135-P4_5p (predicted)
mirBase accessionNone
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Spt-Mir-135-P4_3p* (predicted)
mirBase accessionNone
Sequence 
39- AUGUAGGGCUGAAAGCCAUGGG -61
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