MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-192-P1

Family name MIR-192 (all species)
Seed UGACCUA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-192-P2 
Orthologues Aca-Mir-192-P1  Ami-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01005170.1: 339744-339804 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGCUUUAAUCAGAACUGGUGUACAGGAUAAUGACCUAUGAAUUGACAGACUGUGUAUCCUAAUUGUGUCUGUCAUUUCUGUAGGCCAACAUUCUGCAUGCCUUCACUUCUCAAGAAUCGG
Get precursor sequence
Structure
        10          20        30         40        50         
UCGCUUUAAUCAGAACU--     A      AA  A     -|  U        UGUGUAU 
                   GGUGU CAGGAU  UG CCUAU GAA UGACAGAC       C
                   CCGUA GUCUUA  AC GGAUG CUU ACUGUCUG       C
GGCUAAGAACUCUUCACUU     C      CA  C     U^  U        UGUUAAU 
 .       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Mature sequence

Spt-Mir-192-P1_5p (predicted)

mirBase accessionNone
Sequence
0- AUGACCUAUGAAUUGACAGACU -22
Get sequence
Star sequence

Spt-Mir-192-P1_3p* (predicted)

mirBase accessionNone
Sequence
38- UCUGUCAUUUCUGUAGGCCAACA -61
Get sequence