MirGeneDB ID | Spt-Mir-192-P1 |
---|---|
Family name | MIR-192 (all species) |
Seed | UGACCUA |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-192-P2 |
Orthologues | Aca-Mir-192-P1 Ami-Mir-192-P1 Bta-Mir-192-P1 Cfa-Mir-192-P1 Cli-Mir-192-P1 Cmi-Mir-192-P1 Cpi-Mir-192-P1 Cpo-Mir-192-P1 Dno-Mir-192-P1 Ebu-Mir-192-o1 Ete-Mir-192-P1 Gga-Mir-192-P1 Gja-Mir-192-P1 Hsa-Mir-192-P1 Lch-Mir-192-P1 Mdo-Mir-192-P1 Mml-Mir-192-P1 Mmu-Mir-192-P1 Mun-Mir-192-P1 Oan-Mir-192-P1 Oan-Mir-192-P1-as Ocu-Mir-192-P1 Pbv-Mir-192-P1 Pma-Mir-192-o1 Rno-Mir-192-P1 Sto-Mir-192-P1 Tgu-Mir-192-P1 Xla-Mir-192-P1a Xla-Mir-192-P1b Xtr-Mir-192-P1 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01005170.1: 339744-339804 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UCGCUUUAAUCAGAACUGGUGUACAGGAUAAUGACCUAUGAAUUGACAGACUGUGUAUCCUAAUUGUGUCUGUCAUUUCUGUAGGCCAACAUUCUGCAUGCCUUCACUUCUCAAGAAUCGGGet precursor sequence |
Structure | 10 20 30 40 50 UCGCUUUAAUCAGAACU-- A AA A -| U UGUGUAU GGUGU CAGGAU UG CCUAU GAA UGACAGAC C CCGUA GUCUUA AC GGAUG CUU ACUGUCUG C GGCUAAGAACUCUUCACUU C CA C U^ U UGUUAAU . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Mature sequence | Spt-Mir-192-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- AUGACCUAUGAAUUGACAGACU -22
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|
Star sequence | Spt-Mir-192-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
38- UCUGUCAUUUCUGUAGGCCAACA -61
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|