| MirGeneDB ID | Sto-Mir-12487 |
|---|
| Family name |
MIR-12487 (all species) |
|---|
| Seed |
UUCUAAU |
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| Species |
Cloudy Catshark (Scyliorhinus torazame) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cmi-Mir-12487
|
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| Node of Origin (locus) |
Chondrichthyes
|
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| Node of Origin (family) |
Chondrichthyes
|
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Genome context
(GCA_003427355_STO_add) |
BFAA01001588.1: 508224-508278 [+]
|
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Precursor
(pre-Mir +30nt flank) |
UUCUGGCUUCUCAAACAAUGUCAUAGCACCAGUGUGAUAACACUUAGAAGGGAACUAUUUAUCAUUCUAAUUGUCAUCACUCAGGUGUUGCGUCUGACUACACAACCAUUCAGCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCUGGCUUCUCAAACAAUGUCA--| AGU A C G AACU
UAGCACC GUGAU ACA UUAGAA GG \
GUUGUGG CACUA UGU AAUCUU CU A
UCGACUUACCAACACAUCAGUCUGC^ ACU C U A AUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Sto-Mir-12487_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGUGAUAACACUUAGAAGGG -22
Get sequence
|
|---|
| Mature sequence |
Sto-Mir-12487_3p |
| mirBase accession | None |
|---|
| Sequence |
33- AUUCUAAUUGUCAUCACUCAGG -55
Get sequence
|
|---|
