| MirGeneDB ID | Sto-Mir-12488 |
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| Family name |
MIR-12488 (all species) |
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| Seed |
UUUUUGC |
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| Species |
Cloudy Catshark (Scyliorhinus torazame) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Cmi-Mir-12488
|
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| Node of Origin (locus) |
Chondrichthyes
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| Node of Origin (family) |
Chondrichthyes
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Genome context
(GCA_003427355_STO_add) |
BFAA01003193.1: 112829-112888 [-]
|
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Precursor
(pre-Mir +30nt flank) |
CACGACAUCACGCGUAAGCGGCGUGAUGACGUUUUUGCGACGCGAUGACGUUUUUCGACACAAGUUACAUCAUCACGACGCGAAUUACGUCAUCGCGUCGCGUGGUUACGAGACAGGAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACGACAUCACGCGUAA-- U-| A C C UUUUCGA
GCGGCGUGAUGACGU UUUGCG CG GAUGA GU \
CGCUGCGCUACUGCA AAGCGC GC CUACU CA C
AGAGGACAGAGCAUUGGUG UU^ A A A UUGAACA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
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| Mature sequence |
Sto-Mir-12488_5p |
| mirBase accession | None |
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| Sequence |
0- GUUUUUGCGACGCGAUGACGU -21
Get sequence
|
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| Star sequence |
Sto-Mir-12488_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- AUCAUCACGACGCGAAUUACGU -60
Get sequence
|
|---|
