Mir-128-P1

MirGeneDB ID

Sto-Mir-128-P1

Family name

MIR-128 (all species)

Seed

CACAGUG

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-128-P2 Sto-Mir-128-P3

Orthologues

Aca-Mir-128-P1 Ami-Mir-128-P1 Bta-Mir-128-P1 Cfa-Mir-128-P1 Cja-Mir-128-P1 Cli-Mir-128-P1 Cmi-Mir-128-P1 Cpi-Mir-128-P1 Cpo-Mir-128-P1 Dno-Mir-128-P1 Dre-Mir-128-P1 Ebu-Mir-128 Eca-Mir-128-P1 Ete-Mir-128-P1 Gga-Mir-128-P1 Gja-Mir-128-P1 Gmo-Mir-128-P1 Hsa-Mir-128-P1 Laf-Mir-128-P1 Lch-Mir-128-P1 Loc-Mir-128-P1 Mal-Mir-128-P1 Mdo-Mir-128-P1 Mml-Mir-128-P1 Mmr-Mir-128-P1 Mmu-Mir-128-P1 Mun-Mir-128-P1 Neu-Mir-128-P1 Oan-Mir-128-P1 Ocu-Mir-128-P1 Pab-Mir-128-P1 Pbv-Mir-128-P1 Pma-Mir-128-o1 Rno-Mir-128-P1 Sha-Mir-128-P1 Spt-Mir-128-P1 Tgu-Mir-128-P1 Tni-Mir-128-P1 Xla-Mir-128-P1a Xla-Mir-128-P1b Xtr-Mir-128-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01008602.1: 113193-113250 [-]

Precursor
(pre-Mir +30nt flank)

UCAUUGGAAACAGCACCAAGCAUCUGGAGAGGGGGCCGUUACACUGUAAGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUUUCAGAAGCCACACAUUCAUCGUCCAAAAU

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Structure

        10          20        30        40        50         
UCAUUGGAAACAGCACCAA--| A                UUA      AA    GUGAG 
                     GC UCUGGAGAGGGGGCCG   CACUGU  GAGA     U
                     CG AGACUUUUUCUCUGGC   GUGACA  CUCU     A
UAAAACCUGCUACUUACACAC^ A                CAA      --    GGACG 
      110       100        90        80        70          60

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Sto-Mir-128-P1_5p* (predicted)

mirBase accession

None

Sequence

0- GGGGGCCGUUACACUGUAAGAGA -23

Get sequence

Mature sequence

Sto-Mir-128-P1_3p

mirBase accession

None

Sequence

37- UCACAGUGAACCGGUCUCUUU -58

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