MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-194-P1

Family name MIR-194 (all species)
Seed GUAACAG
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-194-P2 
Orthologues Aca-Mir-194-P1  Ami-Mir-194-P1  Bta-Mir-194-P1  Cfa-Mir-194-P1  Cli-Mir-194-P1  Cmi-Mir-194-P1  Cpi-Mir-194-P1  Ebu-Mir-194-o1  Ete-Mir-194-P1  Gga-Mir-194-P1  Gja-Mir-194-P1  Hsa-Mir-194-P1  Lch-Mir-194-P1  Mml-Mir-194-P1  Mmu-Mir-194-P1  Mun-Mir-194-P1  Oan-Mir-194-P1  Ocu-Mir-194-P1  Pbv-Mir-194-P1  Pma-Mir-194-o1  Rno-Mir-194-P1  Spt-Mir-194-P1  Tgu-Mir-194-P1  Xla-Mir-194-P1a  Xla-Mir-194-P1b  Xtr-Mir-194-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)
BFAA01002633.1: 139313-139368 [-]
Precursor
(pre-Mir +30nt flank)
AAAGACAAGAGGACACCAGUGUGCAUCAGGUGUAACAGCAACUCCAUUUGGAUGGCACUGGCUUCCAGUGGAGCUGCUGUUACUUUCGAUGGGCACUUACAUAUCAAGGAUCCCUU
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Structure
        10          20        30        40        50        
AAAGACAAGAGGACACC--|    G    AG U         A       U   UGGCA 
                   AGUGU CAUC  G GUAACAGCA CUCCAUU GGA     \
                   UCACG GUAG  U CAUUGUCGU GAGGUGA CCU     C
UUCCCUAGGAACUAUACAU^    G    CU U         C       -   UCGGU 
    110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Sto-Mir-194-P1_5p

mirBase accessionNone
Sequence
0- UGUAACAGCAACUCCAUUUGGAU -23
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Star sequence

Sto-Mir-194-P1_3p*

mirBase accessionNone
Sequence
34- CCAGUGGAGCUGCUGUUACUUU -56
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