MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-9-o10-v2

Family name MIR-9 (all species)
Seed UUUGGUG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-9e
Paralogues Tca-Mir-9-o6  Tca-Mir-9-o7  Tca-Mir-9-o8  Tca-Mir-9-o9-v1  Tca-Mir-9-o9-v2  Tca-Mir-9-o10-v1 
Orthologues Aae-Mir-9-P10a  Aae-Mir-9-P10b  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P10  Dme-Mir-9-P10  Dmo-Mir-9-P10  Dsi-Mir-9-P10  Dya-Mir-9-P10  Esc-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Npo-Mir-9  Obi-Mir-9  Ovu-Mir-9  Pmi-Mir-9  Spu-Mir-9  Xbo-Mir-9 
Node of Origin (locus) T. castaneum
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)
LG9: 11088-11145 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-o10-v2)
Mir-2-P10c LG9: 10977-11036 [-] Ensembl
Mir-9-o10-v1 LG9: 11087-11146 [-] Ensembl
Mir-9-o10-v2 LG9: 11088-11145 [-] Ensembl
Mir-279-o25 LG9: 11214-11274 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAACAGGUUGCAAGUCGGAUAUAUUCUUCUUUGGUGAUCUAGUUGUAUGAGUGUUUUAUAUAUCAUAAAGCUGGUUCAGCAAAGCAGAUUGCAUUCGACUCUUCGACGAGCCGAGC
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Structure
        10          20        30        40        50        
UGCAACAGGUUGCAAGU--|    A  U   U     G   U      G     GUGUU 
                   CGGAU UA UCU CUUUG UGA CUAGUU UAUGA     U
                   GCUUA GU AGA GAAAC ACU GGUCGA AUACU     U
CGAGCCGAGCAGCUUCUCA^    C  U   C     G   U      A     AUAUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-9-o10-v2_5p

mirBase accessionMIMAT0023581
Sequence
0- CUUUGGUGAUCUAGUUGUAUGA -22
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Star sequence

Tca-Mir-9-o10-v2_3p*

mirBase accessionMIMAT0023582
Sequence
36- AUAAAGCUGGUUCAGCAAAGCA -58
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