MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-9-o6

Family name MIR-9 (all species)
Seed CUUUGGU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-9a
Paralogues Tca-Mir-9-o7  Tca-Mir-9-o8  Tca-Mir-9-o9-v1  Tca-Mir-9-o9-v2  Tca-Mir-9-o10-v1  Tca-Mir-9-o10-v2 
Orthologues Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Ebu-Mir-9-P6  Esc-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Npo-Mir-9  Obi-Mir-9  Ovu-Mir-9  Pmi-Mir-9  Spu-Mir-9  Xbo-Mir-9 
Node of Origin (locus) T. castaneum
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)		 LGX: 6011261-6011324 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAGUUAUUGCUCAUUGGAACUGAUAUUUUCUUUGGUUAUCUAGCUGUAUGAGUAUUGUUUAAUAACAUCAUAAAGCUAGGUUACCGGAGUUAAAACCAGUUUCCAUACAUCCUCCAUUUUAU
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Structure
        10          20        30        40        50        60 
UGGAGUUAUUGCUCAUU--|      AUA  UU       U        G     GUAUUGU 
                   GGAACUG   UU  CUUUGGU AUCUAGCU UAUGA       U
                   CUUUGAC   AA  GAGGCCA UGGAUCGA AUACU       U
UAUUUUACCUCCUACAUAC^      CAA  UU       U        A     ACAAUAA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-9-o6_5p
mirBase accessionMIMAT0010090
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Tca-Mir-9-o6_3p*
mirBase accessionMIMAT0019177
Sequence 
41- AUAAAGCUAGGUUACCGGAGUUA -64
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