Mir-9-o8

MirGeneDB ID

Tca-Mir-9-o8

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-9c

Paralogues

Tca-Mir-9-o6 Tca-Mir-9-o7 Tca-Mir-9-o9-v1 Tca-Mir-9-o9-v2 Tca-Mir-9-o10-v1 Tca-Mir-9-o10-v2

Orthologues

Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Ebu-Mir-9-P8 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Xbo-Mir-9

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Bilateria

Genome context
(Tcas5.2)

LG3: 15689817-15689876 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-o8)

Mir-3841 LG3: 15689576-15689634 [+] Ensembl
Mir-3840 LG3: 15689698-15689754 [+] Ensembl
Mir-9-o8 LG3: 15689817-15689876 [+] Ensembl
Mir-2-P10a LG3: 15689938-15689994 [+] Ensembl
Mir-279-o23 LG3: 15690069-15690126 [+] Ensembl
Mir-3843 LG3: 15690171-15690228 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UACUUGUGAUUUUGCUAACGCGUUAUCACUUCUUUGGUGAUCUAGCCGUGUGAAUUAUUUUUGAAAUCACGCGUCUAAGUCGCCAAGAUUUGAUGAUGUGUCUAACAACUGGAGAUUUAA

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Structure

        10          20        30        40        50          
UACUUGUGAUUUUGCUA--|          CU    U     UC   C       AUUAUU 
                   ACGCGUUAUCA  UCUU GGUGA  UAG CGUGUGA      \
                   UGUGUAGUAGU  AGAA CCGCU  AUC GCGCACU      U
AAUUUAGAGGUCAACAAUC^          UU    -     GA   U       AAAGUU 
.       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-9-o8_5p

mirBase accession

MIMAT0018714

Sequence

0- UCUUUGGUGAUCUAGCCGUGUGA -23

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Star sequence

Tca-Mir-9-o8_3p*

mirBase accession

MIMAT0018715

Sequence

38- ACGCGUCUAAGUCGCCAAGAUU -60

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