Mir-9-o9-v2

MirGeneDB ID

Tca-Mir-9-o9-v2

Family name

MIR-9 (all species)

Seed

AAAGCUA

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-9d

Paralogues

Tca-Mir-9-o6 Tca-Mir-9-o7 Tca-Mir-9-o8 Tca-Mir-9-o9-v1 Tca-Mir-9-o10-v1 Tca-Mir-9-o10-v2

Orthologues

Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P9 Dme-Mir-9-P9 Dmo-Mir-9-P9 Dsi-Mir-9-P9 Dya-Mir-9-P9 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Xbo-Mir-9

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Bilateria

Genome context
(Tcas5.2)

LG5: 7455728-7455788 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-o9-v2)

Mir-9-o9-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-o9-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P10b LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GCACCCGUAGAAAUACGUCUACUUUAUAUUUCUUUGGUGAUCUAACUUAUGAUUAACUUUAUAAGUCAUAAAGCUAGAUUCACCAAAGAAAUAUGUGGUUGGCAACGCUACGUUCUGAAGA

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Structure

        10          20        30         40         50         
GCACCCGUAGAAAUACG--  U   U               -     A -|    AUUAACU 
                   UC ACU UAUAUUUCUUUGGUG AUCUA C UUAUG       \
                   GG UGG GUAUAAAGAAACCAC UAGAU G AAUAC       U
AGAAGUCUUGCAUCGCAAC  U   U               U     C A^    UGAAUAU 
 .       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-9-o9-v2_5p*

mirBase accession

MIMAT0018748

Sequence

0- UCUUUGGUGAUCUAACUUAUG -21

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Mature sequence

Tca-Mir-9-o9-v2_3p

mirBase accession

MIMAT0018749

Sequence

38- UAAAGCUAGAUUCACCAAAGAAA -61

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