MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-92-o58

Family name MIR-92 (all species)
Seed AUUGCAC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-92a
Paralogues Tca-Mir-92-o59  Tca-Mir-92-o60 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) T. castaneum
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)
LG8: 3039003-3039061 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o58)
Mir-92-o58 LG8: 3039003-3039061 [+] Ensembl
Mir-92-o59 LG8: 3039554-3039615 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAUUUGAGGUUAAAGUUCGCGCUUUCAGUAGUCCGUGAUGCGUGACAAUAUUUAGUUUUUUUCGAAUAUUGCACUAGUCCCGGCCUAUUGAGGGCGCGAGCAUCGCCGUCACGUGUGU
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Structure
        10          20        30        40        50         
UUAUUUGAGGUUAAAGU--|              U   U   GC   A       UAGUU 
                   UCGCGCUUUCAGUAG CCG GAU  GUG CAAUAUU     U
                   AGCGCGGGAGUUAUC GGC CUG  CAC GUUAUAA     U
UGUGUGCACUGCCGCUACG^              C   C   AU   -       GCUUU 
       110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-92-o58_5p*

mirBase accessionMIMAT0019111
Sequence
0- AGUCCGUGAUGCGUGACAAUAUU -23
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Mature sequence

Tca-Mir-92-o58_3p

mirBase accessionMIMAT0008367
Sequence
37- UAUUGCACUAGUCCCGGCCUAU -59
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