MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-1416

Family name MIR-1416 (all species)
Seed CCUUAAC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues
Orthologues Ami-Mir-1416  Cli-Mir-1416  Cpi-Mir-1416  Gga-Mir-1416  Oan-Mir-1416 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(TaeGut1_add)
Z: 12198647-12198705 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCUCAUGAAAAGCAGGGUUGAUCCUCUUUCCUUAACUCAUGCCACUGUGCCUUUUUAUUUACUUCACCAUUGUGUGAGUUGAGUACAGAGUGUCUUUCCAACCCUGCGUCACCCCCU
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Structure
        10         20         30        40        50         
CGUCUCAUGAAAAGCAG-  UU-| UC    UUC            CACU   CCUUUUU 
                  GG   GA  CUCU   CUUAACUCAUGC    GUG       \
                  CC   CU  GAGA   GAGUUGAGUGUG    CAC       A
UCCCCCACUGCGUCCCAA  UUU^ GU    CAU            UUAC   UUCAUUU 
       110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-1416_5p (predicted)

mirBase accessionNone
Sequence
0- UCCUUAACUCAUGCCACUGUGC -22
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Star sequence

Tgu-Mir-1416_3p* (predicted)

mirBase accessionNone
Sequence
37- ACCAUUGUGUGAGUUGAGUACA -59
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