| MirGeneDB ID | Tgu-Mir-1416 |
|---|
| Family name |
MIR-1416 (all species) |
|---|
| Seed |
CCUUAAC |
|---|
| Species |
Zebra finch (Taeniopygia guttata) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Ami-Mir-1416
Cli-Mir-1416
Cpi-Mir-1416
Gga-Mir-1416
Oan-Mir-1416
|
|---|
| Node of Origin (locus) |
Amniota
|
|---|
| Node of Origin (family) |
Amniota
|
|---|
Genome context
(TaeGut1_add) |
Z: 12198647-12198705 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGUCUCAUGAAAAGCAGGGUUGAUCCUCUUUCCUUAACUCAUGCCACUGUGCCUUUUUAUUUACUUCACCAUUGUGUGAGUUGAGUACAGAGUGUCUUUCCAACCCUGCGUCACCCCCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGUCUCAUGAAAAGCAG- UU-| UC UUC CACU CCUUUUU
GG GA CUCU CUUAACUCAUGC GUG \
CC CU GAGA GAGUUGAGUGUG CAC A
UCCCCCACUGCGUCCCAA UUU^ GU CAU UUAC UUCAUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Tgu-Mir-1416_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UCCUUAACUCAUGCCACUGUGC -22
Get sequence
|
|---|
| Star sequence |
Tgu-Mir-1416_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- ACCAUUGUGUGAGUUGAGUACA -59
Get sequence
|
|---|
