MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-1729

Family name MIR-1729 (all species)
Seed UCCCUUA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-1729
Paralogues
Orthologues Cli-Mir-1729  Gga-Mir-1729 
Node of Origin (locus) Neognathae
Node of Origin (family) Neognathae
Genome context
(TaeGut1_add)
15: 6583448-6583510 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCUCUUUGGUAGACAGGCCUGAUCCUGCAUCCCUUACUCACGUGAGCAGUCGUCUCUAUGUCAAAGGGACUACUCGGUGAGUAAGGAUCGCAGGAUUGGGACCACUACCUGUAACUUAAAC
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Structure
        10          20        30         40        50        60 
AGCCUCUUUGGUAGACA-  -  UG       -|   C        G    C    GUCUCUA 
                  GG CC  AUCCUGC AUCC UUACUCAC UGAG AGUC       U
                  CC GG  UAGGACG UAGG AAUGAGUG GCUC UCAG       G
CAAAUUCAAUGUCCAUCA  A  GU       C^   -        -    A    GGAAACU 
 120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-1729_5p

mirBase accessionMIMAT0014467
Sequence
0- AUCCCUUACUCACGUGAGCAGUC -23
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Star sequence

Tgu-Mir-1729_3p*

mirBase accessionMIMAT0026963
Sequence
41- CUACUCGGUGAGUAAGGAUCGC -63
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