MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-194-P1

Family name MIR-194 (all species)
Seed GUAACAG
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-194-1
Paralogues
Orthologues Aca-Mir-194-P1  Ami-Mir-194-P1  Bta-Mir-194-P1  Cfa-Mir-194-P1  Cli-Mir-194-P1  Cmi-Mir-194-P1  Cpi-Mir-194-P1  Ebu-Mir-194-o1  Ete-Mir-194-P1  Gga-Mir-194-P1  Gja-Mir-194-P1  Hsa-Mir-194-P1  Lch-Mir-194-P1  Mml-Mir-194-P1  Mmu-Mir-194-P1  Mun-Mir-194-P1  Oan-Mir-194-P1  Ocu-Mir-194-P1  Pbv-Mir-194-P1  Pma-Mir-194-o1  Rno-Mir-194-P1  Spt-Mir-194-P1  Sto-Mir-194-P1  Xla-Mir-194-P1a  Xla-Mir-194-P1b  Xtr-Mir-194-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
3: 104322345-104322400 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P1)
Mir-192-P1 3: 104322023-104322081 [-] UCSC Ensembl
Mir-194-P1 3: 104322345-104322400 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACUCAAGAUCGACCACUGGUGCUCUCAUAUGUAACAGCAACUCCAUGUGGACUACACUGACUUCCAGUGGAGAUGCUGUUACUUUUGAUGGUCACUCAAAAACUCCACAGCAGCU
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Structure
        10         20         30        40        50        
AACUCAAGAUCGACCACU-    -| C   UAU         A      G    CUACA 
                   GGUG CU UCA   GUAACAGCA CUCCAU UGGA     \
                   UCAC GG AGU   CAUUGUCGU GAGGUG ACCU     C
UCGACGACACCUCAAAAAC    U^ U   UUU         A      -    UCAGU 
    110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-194-P1_5p

mirBase accessionMIMAT0014558
Sequence
0- UGUAACAGCAACUCCAUGUGGAC -23
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Star sequence

Tgu-Mir-194-P1_3p*

mirBase accessionMIMAT0027001
Sequence
34- CCAGUGGAGAUGCUGUUACUUU -56
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