| MirGeneDB ID | Tgu-Mir-7643 |
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| Family name |
MIR-7643 (all species) |
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| Seed |
UGACUGA |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
tgu-mir-7643
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
T. guttata
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| Node of Origin (family) |
T. guttata
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Genome context
(TaeGut1_add) |
1: 21126216-21126275 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UACCUGGACAUGGCAGUGUGCAAGGGGAAGGUGACUGAGACAUGAUGCUCAUAAUGACCUUUGUAAAUGACAUCUGUUUCUCAGUCAACAACUCCCUUGAUUUGCCCUCAUCCUGACAGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UACCUGGACAUGGCAGUGUG- AAG - C -| C AAUGAC
CAAGGGG G UGACUGAGA AU GAUG UCAU C
GUUCCCU C ACUGACUCU UG CUAC AGUA U
UGACAGUCCUACUCCCGUUUA CAA A U U^ - AAUGUU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Tgu-Mir-7643_5p |
| mirBase accession | MIMAT0029786 |
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| Sequence |
0- GUGACUGAGACAUGAUGCUCAU -22
Get sequence
|
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| Star sequence |
Tgu-Mir-7643_3p* |
| mirBase accession | MIMAT0029787 |
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| Sequence |
38- GACAUCUGUUUCUCAGUCAACA -60
Get sequence
|
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