| MirGeneDB ID | Tni-Novel-2 |
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| Family name |
TNI-NOVEL-2 (all species) |
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| Seed |
CGGAACC |
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| Species |
Pufferfish (Tetraodon nigroviridis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
T. nigroviridis
|
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| Node of Origin (family) |
T. nigroviridis
|
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Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
16: 8126668-8126722 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCCUCCGCCGAGCAUUAGCCACCAGCGCGAGCGCCGCGCUGGUUCCCAGUCCGCGGACUGGACCGGAACCAGCGCGGCGCCUCUGUUCCGCUUCAGCGACUCCAUCUCAUCAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCCUCCGCCGAGCAUU-----| CACC C - CA CGCG
AGC AGCG GAG CGCCGCGCUGGUUCC GUC \
UCG UUGU CUC GCGGCGCGACCAAGG CAG G
UAACUACUCUACCUCAGCGACU^ CC-- - C C- GUCA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Tni-Novel-2_5p* |
| mirBase accession | None |
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| Sequence |
0- AGCGCCGCGCUGGUUCCCAGUC -22
Get sequence
|
|---|
| Mature sequence |
Tni-Novel-2_3p |
| mirBase accession | None |
|---|
| Sequence |
33- CCGGAACCAGCGCGGCGCCUCU -55
Get sequence
|
|---|
