| MirGeneDB ID | Xbo-Novel-5 |
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| Family name |
XBO-NOVEL-5 (all species) |
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| Seed |
GCGGUAG |
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| Species |
Xenoturbella (Xenoturbella bocki) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
|
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| Node of Origin (family) |
X. bocki
|
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Genome context
(genome.xe) |
scaffold679: 46590-46647 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGAACAAGGGGUGAUCAGCUGUUUUUCUGCACUUCUAAGUUGUUAACGCAAAUGUAACUUUGGUUUUGCGGUAGCAGAUUAGAAGUACGGACGUUCAGUAAGUCGUCGAUGGAGCAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGAACAAGGGGUGAUCA--| UUUU C G A AUGUAA
GCUG UCUG ACUUCUAA UUGUUA CGCAA C
UGAC AGGC UGAAGAUU GACGAU GCGUU U
CAACGAGGUAGCUGCUGAA^ UUGC A A G UUGGUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Xbo-Novel-5_5p* |
| mirBase accession | None |
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| Sequence |
0- ACUUCUAAGUUGUUAACGCAA -21
Get sequence
|
|---|
| Mature sequence |
Xbo-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UGCGGUAGCAGAUUAGAAGUAC -58
Get sequence
|
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