MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-192-P1b

Family name MIR-192 (all species)
Seed UGACCUA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-192-P1a  Xla-Mir-192-P2c  Xla-Mir-192-P2d 
Orthologues Aca-Mir-192-P1  Ami-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xtr-Mir-192-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030733.1: 14168868-14168929 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACCAAUGAUCUAACUGGUAACCAGGAGGAUGACCUAUGAAAUGACAGCCACUUCCACACCAAACAUGUCUGUCAUUUCUGUAGGCCAAUAUUCUGAUUGCCUUGUUGACGGCAGAGAAAU
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Structure
        10          20        30         40        50          
GGACCAAUGAUCUAACU--     C     GGA  A     -|         C  CUUCCAC 
                   GGUAA CAGGA   UG CCUAU GAAAUGACAG CA       \
                   CCGUU GUCUU   AC GGAUG CUUUACUGUC GU       A
UAAAGAGACGGCAGUUGUU     A     AUA  C     U^         U  ACAAACC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-192-P1b_5p

mirBase accessionNone
Sequence
0- AUGACCUAUGAAAUGACAGCCA -22
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Star sequence

Xla-Mir-192-P1b_3p*

mirBase accessionNone
Sequence
39- UCUGUCAUUUCUGUAGGCCAAUA -62
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