MirGeneDB ID | Xla-Mir-192-P1b |
Family name |
MIR-192 (all species) |
Seed |
UGACCUA |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-192-P1a
Xla-Mir-192-P2c
Xla-Mir-192-P2d
|
Orthologues |
Aca-Mir-192-P1
Ami-Mir-192-P1
Bta-Mir-192-P1
Cfa-Mir-192-P1
Cli-Mir-192-P1
Cmi-Mir-192-P1
Cpi-Mir-192-P1
Cpo-Mir-192-P1
Dno-Mir-192-P1
Ebu-Mir-192-o1
Ete-Mir-192-P1
Gga-Mir-192-P1
Gja-Mir-192-P1
Hsa-Mir-192-P1
Lch-Mir-192-P1
Mdo-Mir-192-P1
Mml-Mir-192-P1
Mmu-Mir-192-P1
Mun-Mir-192-P1
Oan-Mir-192-P1
Oan-Mir-192-P1-as
Ocu-Mir-192-P1
Pbv-Mir-192-P1
Pma-Mir-192-o1
Rno-Mir-192-P1
Spt-Mir-192-P1
Sto-Mir-192-P1
Tgu-Mir-192-P1
Xtr-Mir-192-P1
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030733.1: 14168868-14168929 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGACCAAUGAUCUAACUGGUAACCAGGAGGAUGACCUAUGAAAUGACAGCCACUUCCACACCAAACAUGUCUGUCAUUUCUGUAGGCCAAUAUUCUGAUUGCCUUGUUGACGGCAGAGAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGACCAAUGAUCUAACU-- C GGA A -| C CUUCCAC
GGUAA CAGGA UG CCUAU GAAAUGACAG CA \
CCGUU GUCUU AC GGAUG CUUUACUGUC GU A
UAAAGAGACGGCAGUUGUU A AUA C U^ U ACAAACC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-192-P1b_5p |
mirBase accession | None |
Sequence |
0- AUGACCUAUGAAAUGACAGCCA -22
Get sequence
|
Star sequence |
Xla-Mir-192-P1b_3p* |
mirBase accession | None |
Sequence |
39- UCUGUCAUUUCUGUAGGCCAAUA -62
Get sequence
|