MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-196-P1f

Family name MIR-196 (all species)
Seed AGGUAGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-196-P1e  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4c-v2  Xla-Mir-196-P4d-v1  Xla-Mir-196-P4d-v2 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Xtr-Mir-196-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Olfactores
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030735.1: 33756951-33757010 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGUGUUAGCACAGAGCCGCUGUGUGGUUUAGGUAGUUUUAUGUUGUUGGGCAUUUCACUUUUCUCUCUACAACACGAAACUGCCUUAAUUACAUCAGUGGGAUUCAUCACCCAUGUAG
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Structure
        10         20         30        40         50         
CAAGUGUUAGCACAGAG-      -       U         UA      U-|  CAUUUC 
                  CCGCUG UGUGGUU AGGUAGUUU  UGUUGU  GGG      \
                  GGUGAC ACAUUAA UCCGUCAAA  ACAACA  UCU      A
GAUGUACCCACUACUUAG      U       U         GC      UC^  CUUUUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-196-P1f_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUUAUGUUGUUGGG -22
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Star sequence

Xla-Mir-196-P1f_3p*
mirBase accessionNone
Sequence 
38- CUACAACACGAAACUGCCUUAA -60
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