MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-1388

Family name MIR-1388 (all species)
Seed UCUCAGG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(xenTro9_add)		 NC_030686.2:1249050-1250250: 1035-1095 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGGGCCAAGACACGAGCGCUGUUGCCCCAGGGACUGUCUGACCUGGGAAUGGGGACAAAUGAACAUCAAUCUCAGGUUUGUCAGCCCGUGGGGCAGUAGUUGGAGGCAGCGAGAAGAGGU
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Structure
        10          20        30         40        50          
AGGGGCCAAGACACGAGC--            -|  A   UCU         A  GGGACAA 
                    GCUGUUGCCCCA GGG CUG   GACCUGGGA UG       \
                    UGAUGACGGGGU CCC GAC   UUGGACUCU AC       A
UGGAGAAGAGCGACGGAGGU            G^  -   UGU         A  UACAAGU 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-1388_5p*
mirBase accessionNone
Sequence 
0- GGGACUGUCUGACCUGGGAAUG -22
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Mature sequence

Xtr-Mir-1388_3p
mirBase accessionNone
Sequence 
39- AUCUCAGGUUUGUCAGCCCGUG -61
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