| MirGeneDB ID | Xtr-Novel-8 |
|---|
| Family name |
XEN-NOVEL-8 (all species) |
|---|
| Seed |
GAAGUGA |
|---|
| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Xla-Novel-8-P1
Xla-Novel-8-P2
|
|---|
| Node of Origin (locus) |
Xenopus
|
|---|
| Node of Origin (family) |
Xenopus
|
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Genome context
(xenTro9_add) |
chr3: 989597-989652 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCCGAAGACGAGCCGUGGGGUAAGACACCGUUAGCAAUGCAUUUACUUCUAUUCACUUGCAAAGAGAAGUGAAUGUGUUGUUAGCUGUGCAUUAGCCAAUAUCUCCCUGCCAGGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCCGAAGACGAGCCGUG--| G GA C AUUCAC
GG UAA CAC GUUAGCAAUGCAUUUACUUCU U
CC AUU GUG CGAUUGUUGUGUAAGUGAAGA U
AGGGACCGUCCCUCUAUAA^ G AC U GAAACG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Xtr-Novel-8_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UUAGCAAUGCAUUUACUUCUAU -22
Get sequence
|
|---|
| Mature sequence |
Xtr-Novel-8_3p |
| mirBase accession | None |
|---|
| Sequence |
34- AGAAGUGAAUGUGUUGUUAGCU -56
Get sequence
|
|---|
