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References
Tissue	Paper	Accesion
ovaries-adult_bge_SRR060166	SRR060166	https://www.ncbi.nlm.nih.gov/pubmed/21552535
control1_bge_SRR3666045	SRR3666045	https://www.ncbi.nlm.nih.gov/pubmed/27883064
control2_bge_SRR3666046	SRR3666046	https://www.ncbi.nlm.nih.gov/pubmed/27883064
dicer-KO1_bge_SRR3666047	SRR3666047	https://www.ncbi.nlm.nih.gov/pubmed/27883064
dicer-KO2_bge_SRR3666048	SRR3666048	https://www.ncbi.nlm.nih.gov/pubmed/27883064
eggs-2-non-fecundated_bge_SRR4252605	SRR4252605	https://www.ncbi.nlm.nih.gov/pubmed/29020923
eggs-1-non-fecundated_bge_SRR4252606	SRR4252606	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-0-1_bge_SRR4252607	SRR4252607	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-0-2_bge_SRR4252608	SRR4252608	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-1-1_bge_SRR4252609	SRR4252609	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-1-2_bge_SRR4252610	SRR4252610	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-2-2_bge_SRR4252611	SRR4252611	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-2-1_bge_SRR4252612	SRR4252612	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-6-1_bge_SRR4252613	SRR4252613	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-6-2_bge_SRR4252614	SRR4252614	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-13-1_bge_SRR4252615	SRR4252615	https://www.ncbi.nlm.nih.gov/pubmed/29020923
embryo-day-13-2_bge_SRR4252616	SRR4252616	https://www.ncbi.nlm.nih.gov/pubmed/29020923
nymph-1-1_bge_SRR4252617	SRR4252617	https://www.ncbi.nlm.nih.gov/pubmed/29020923
nymph-1-2_bge_SRR4252618	SRR4252618	https://www.ncbi.nlm.nih.gov/pubmed/29020923
nymph-3-2_bge_SRR4252619	SRR4252619	https://www.ncbi.nlm.nih.gov/pubmed/29020923
nymph-3-1_bge_SRR4252620	SRR4252620	https://www.ncbi.nlm.nih.gov/pubmed/29020923
nymph-5-1_bge_SRR4252621	SRR4252621	https://www.ncbi.nlm.nih.gov/pubmed/29020923
nymph-5-2_bge_SRR4252622	SRR4252622	https://www.ncbi.nlm.nih.gov/pubmed/29020923
nymph-6-1_bge_SRR4252623	SRR4252623	https://www.ncbi.nlm.nih.gov/pubmed/29020923
nymph-6-2_bge_SRR4252624	SRR4252624	https://www.ncbi.nlm.nih.gov/pubmed/29020923
adult-female1_bge_SRR4252625	SRR4252625	https://www.ncbi.nlm.nih.gov/pubmed/29020923
adult-female2_bge_SRR4252626	SRR4252626	https://www.ncbi.nlm.nih.gov/pubmed/29020923

Bge-Mir-2-P4-v2

Legend
both truncated	5' elongated	3' elongated	both elongated	5' truncated	3' truncated	canonical
both truncated mismatch	5' elongated mismatch	3' elongated mismatch	both elongated mismatch	5' truncated mismatch	3' truncated mismatch	canonical mismatch

Reads

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	184.37	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	A	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	122.91	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	A	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	61.46	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
U	G	A	U	A	G	U	U	C	G	G	A	G	A	U	U	A	U	G	A	U	C	U	C	A	U	U	G	C	C	C	U	C	G	U	C	A	G	A	G	U	G	G	U	U	A	U	G	A	U	G	U	G	U	C	U	A	U	A	U	U	A	A	U	U	U	C	A	U	A	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	G	C	A	A	A	G	G	G	A	U	U	C	U	A	A	A	C	A	C	C	U	U	U	U	A	A	G	A	A	A	A

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Reads

+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	Reads	RPM	Other miRNA genes
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	184.37	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	A	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	122.91	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	A	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	61.46	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	A	A	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	61.46	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	A	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	61.46	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	A	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	122.91	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	A	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	A	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	61.46	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	U	A	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	A	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	61.46	Bge-Mir-2-P1-v1, Bge-Mir-2-P1-v2, ...
U	G	A	U	A	G	U	U	C	G	G	A	G	A	U	U	A	U	G	A	U	C	U	C	A	U	U	G	C	C	C	U	C	G	U	C	A	G	A	G	U	G	G	U	U	A	U	G	A	U	G	U	G	U	C	U	A	U	A	U	U	A	A	U	U	U	C	A	U	A	U	C	A	C	A	G	C	C	A	G	C	U	U	U	G	A	U	G	A	G	C	G	C	A	A	A	G	G	G	A	U	U	C	U	A	A	A	C	A	C	C	U	U	U	U	A	A	G	A	A	A	A

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