MirGeneDB ID | Aca-Mir-9576 |
Family name |
MIR-9576 (all species) |
Seed |
UUUUAUA |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-9576
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
A. carolinensis
|
Node of Origin (family) |
A. carolinensis
|
Genome context (anoCar2) |
GL343418.1: 621266-621323 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUCUAUGAAUAGAUGCCAUCCCAGGUUCCUUCUACACUGCCAUAUAAUCCAGAUUAUCUGUUUUGAUUUUAUAUGGCAAUGUAGAGGAAGGUUUCUUUUCCCACCACGACCCCUUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUCUAUGAAUAGAUGCCAUC-----| AGG U C UCCAGAUUAU
CC UUCCU CUACA UGCCAUAUAA \
GG AAGGA GAUGU ACGGUAUAUU C
CUUUCCCCAGCACCACCCUUUUCUUU^ --- - A UUAGUUUUGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Aca-Mir-9576_5p* |
mirBase accession | MIMAT0037586 |
Sequence |
0- UUCUACACUGCCAUAUAAUCCA -22
Get sequence
|
Mature sequence |
Aca-Mir-9576_3p |
mirBase accession | MIMAT0037587 |
Sequence |
36- AUUUUAUAUGGCAAUGUAGAGG -58
Get sequence
|