MirGeneDB 3.0

SpeciesPrecursor sequencesPrecursors w/flank (+30nt) Mature sequencesStar sequencesLoop sequencesAll sequences Genomic coordinatesCount matrix
- All species Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED
Human (Homo sapiens) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Sumatran orangutan (Pongo abelii) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Rhesus monkey (Macaca mulatta) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
White-tufted-ear marmoset (Callithrix jacchus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Gray mouse lemur (Microcebus murinus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
House mouse (Mus musculus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Norway rat (Rattus norvegicus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Guinea pig (Cavia porcellus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Rabbit (Oryctolagus cuniculus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Cow (Bos taurus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Horse (Equus caballus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Dog (Canis familiaris) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Nine-banded armadillo (Dasypus novemcinctus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
African bush elephant (Loxodonta africana) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Lesser hedgehog tenrec (Echinops telfairi) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Gray short-tailed opossum (Monodelphis domestica) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Tasmanian devil (Sarcophilus harrisii) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Tammar Wallaby (Notamacropus eugenii) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Platypus (Ornithorhynchus anatinus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Chicken (Gallus gallus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Rock pigeon (Columba livia) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Zebra finch (Taeniopygia guttata) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
American alligator (Alligator mississippiensis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Western painted turtle (Chrysemys picta bellii) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Green anole lizard (Anolis carolinensis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Burmese python (Python bivittatus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Schlegels Japanese gecko (Gekko japonicus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Tuatara (Sphenodon punctatus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Tropical clawed frog (Xenopus tropicalis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
African clawed frog (Xenopus laevis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Microcaecilia (Microcaecilia unicolor) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Coelacanth (Latimeria chalumnae) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Asian swamp eel (Monopterus albus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Pufferfish (Tetraodon nigroviridis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Cod (Gadus morhua) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Zebrafish (Danio rerio) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Spotted gar (Lepisosteus oculatus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Australian ghostshark (Callorhinchus milii) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Cloudy Catshark (Scyliorhinus torazame) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Inshore hagfish (Eptatretus burgeri) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Sea Lamprey (Petromyzon marinus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Sea Squirt (Ciona intestinalis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Florida lancelet (Branchiostoma floridae) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
European lancelet (Branchiostoma lanceolatum) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Saccoglossus (Saccoglossus kowalevskii) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Ptychodera (Ptychodera flava) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Purple sea urchin (Strongylocentrotus purpuratus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Bat starfish (Patiria miniata) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Fruit fly (Drosophila melanogaster) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Fruit fly (Drosophila simulans) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Fruit fly (Drosophila yakuba) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Fruit fly (Drosophila ananassae) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Fruit fly (Drosophila mojavensis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Tsetse fly (Glossina pallidipes) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Yellow fever mosquito (Aedes aegypti) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
African malaria mosquito (Anopheles gambiae) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Longwing butterfly (Heliconius melpomene) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Red flour beetle (Tribolium castaneum) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Braconid wasp (Diachasmimorpha longicaudata) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Cockroach (Blattella germanica) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Common water flea (Daphnia pulex) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Large common water flea (Daphnia magna) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Deer tick (Ixodes scapularis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Two-spotted spider mite (Tetranychus urticae) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Arizona bark scorpion (Centruroides sculpturatus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Atlantic horseshoe crab (Limulus polyphemus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Roundworm (Caenorhabditis elegans) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Roundworm (Caenorhabditis briggsae) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Large roundworm (Ascaris suum) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Montseny horsehair worm (Gordionus sp.) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Penis worm (Priapulus caudatus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
California two-spot octopus (Octopus bimaculoides) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Common octopus (Octopus vulgaris) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Hawaiian bobtail squid (Euprymna scolopes) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Chambered Nautilus (Nautilus pompilius) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Owl limpet (Lottia gigantea) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Red Abalone (Haliotis rufescens) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Pacific oyster (Magallana gigas) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Japanese carpet shell (Ruditapes philippinarum) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Vernerds tusk shell (Pictodentalium vernedei) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Laevipilina (Monoplacophora) (Laevipilina hyalina) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
West Indian fuzzy chiton (Acanthopleura granulata ) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Mossy chiton (Mopalia muscosa) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Epimenia (Solenogaster) (Epimenia babai) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Wirenia (Solenogaster) (Wirenia argentea) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Polychaete worm (Capitella teleta) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Common brandling worm (Eisenia fetida) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Tubeworm (Owenia fusiformis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Dumerils clam worm (Platynereis dumerilii) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Peanut worm (Sipunculus nudus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Dimorphilus gyrociliatus (Dimorphilus gyrociliatus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Lingula (Lingula anatina) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Horseshoe worm (Phoronis australis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Bootlace worm (Lineus longissimus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Tiger flatworm (Prostheceraeus crozieri ) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Freshwater planarian (Schmidtea mediterranea) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Russian doll killer (Gyrodactylus salaris) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Blood fluke (Schistosoma mansoni) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Hydatid worm (Echinococcus granulosus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Monogonont Rotifer 1 (Brachionus plicatilis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Monogonont Rotifer 2 (Brachionus koreanus) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Bdelloid rotifer (Adineta vaga) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Seison (Seison nebaliae) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Thorny-headed worm 1 (Neoechinorhynchus agilis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Thorny-headed worm 2 (Pomphorhynchus laevis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Xenoturbella (Xenoturbella bocki) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Panther worm (Hofstenia miamia) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Roscoff worm (Symsagittifera roscoffensis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Starlet sea anemone (Nematostella vectensis) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Deep-sea anemone (Actinernus sp.) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Stony coral (Acropora digitifera) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Freshwater-polyp (Hydra vulgaris) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Amphimedon (Amphimedon queenslandica) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table
Muellers freshwater sponge (Ephydatia muelleri) Download fasta Download fasta Download fasta Download fasta Download fasta Download fasta Download GFF Download BED Download table