MirGeneDB ID | Agr-Mir-12592 |
Family name |
MIR-12592 (all species) |
Seed |
UUGACAU |
Species |
West Indian fuzzy chiton (Acanthopleura granulata ) |
MiRBase ID |
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Paralogues |
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Orthologues |
Mom-Mir-12592
|
Node of Origin (locus) |
Polyplacophora
|
Node of Origin (family) |
Polyplacophora
|
Genome context (GCA_016165875.1_ASM1616587v1_Acanthopleura_granula) |
JABBOT010000004.1: 28923677-28923736 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CAGAGAAAAGUGAGACCUCUCGUUGUCACGCGACGGGACUUGAUGGUUAGAUCGCUGUUAUAAACUAGAUUGACAUCAAGUCUCGCCAUGUGAUCGCGAGAUUUGACCUCCAUCCACUAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGAGAAAAGUGAGACC--| U CGA GUUA GCUGUU
UCUCGU GUCACG CGGGACUUGAUG GAUC A
AGAGCG UAGUGU GCUCUGAACUAC UUAG U
CAUCACCUACCUCCAGUUU^ C ACC AG-- AUCAAA
. 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Agr-Mir-12592_5p* |
mirBase accession | None |
Sequence |
0- CGACGGGACUUGAUGGUUAGAUCG -24
Get sequence
|
Mature sequence |
Agr-Mir-12592_3p |
mirBase accession | None |
Sequence |
38- AUUGACAUCAAGUCUCGCCAUG -60
Get sequence
|