MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-9602

Family name MIR-9602 (all species)
Seed GGCAGCC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-9602
Paralogues
Orthologues
Node of Origin (locus) A. mississippiensis
Node of Origin (family) A. mississippiensis
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711568.1: 18043998-18044060 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACGUUUCACACACGUGGGGUCAGGAGGGCAGGGCAGCCUGACUCGCAGCAGAGAGCUGAUGCCUGUACCUGUGCUGAGGGUCAGGCUGGACUGCAGCCACCCUGGCUCGCUCCAUGCAAACCC
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Structure
        10        20           30        40        50        60 
ACGUUUCACACACGUGGGG     AG   ---| GG           G     G GAGCUGAU 
                   UCAGG  GGC   AG  CAGCCUGACUC CAGCA A        \
                   GGUCC  CCG   UC  GUCGGACUGGG GUCGU U        G
CCCAAACGUACCUCGCUC-     CA   ACG^ AG           A     G CCAUGUCC 
 120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-9602_5p

mirBase accessionMIMAT0038348
Sequence
0- GGGCAGCCUGACUCGCAGCAGA -22
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Star sequence

Ami-Mir-9602_3p*

mirBase accessionMIMAT0038349
Sequence
41- UGCUGAGGGUCAGGCUGGACUG -63
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