| MirGeneDB ID | Ami-Mir-9602 |
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| Family name |
MIR-9602 (all species) |
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| Seed |
GGCAGCC |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-9602
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. mississippiensis
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| Node of Origin (family) |
A. mississippiensis
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017711568.1: 18043998-18044060 [-]
UCSC
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Precursor
(pre-Mir +30nt flank) |
ACGUUUCACACACGUGGGGUCAGGAGGGCAGGGCAGCCUGACUCGCAGCAGAGAGCUGAUGCCUGUACCUGUGCUGAGGGUCAGGCUGGACUGCAGCCACCCUGGCUCGCUCCAUGCAAACCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACGUUUCACACACGUGGGG AG ---| GG G G GAGCUGAU
UCAGG GGC AG CAGCCUGACUC CAGCA A \
GGUCC CCG UC GUCGGACUGGG GUCGU U G
CCCAAACGUACCUCGCUC- CA ACG^ AG A G CCAUGUCC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Ami-Mir-9602_5p |
| mirBase accession | MIMAT0038348 |
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| Sequence |
0- GGGCAGCCUGACUCGCAGCAGA -22
Get sequence
|
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| Star sequence |
Ami-Mir-9602_3p* |
| mirBase accession | MIMAT0038349 |
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| Sequence |
41- UGCUGAGGGUCAGGCUGGACUG -63
Get sequence
|
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