| MirGeneDB ID | Ami-Mir-9613 |
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| Family name |
MIR-9613 (all species) |
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| Seed |
CUGGCGU |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-9613
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. mississippiensis
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| Node of Origin (family) |
A. mississippiensis
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017713513.1: 10617025-10617088 [-]
UCSC
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Precursor
(pre-Mir +30nt flank) |
GGGUAGAGCCACAAUCUGCUCCUUGCUUUUUUCUGCAACAGGUGCCAGUUCACUGCUCUGUAGUUUCUGUGGAACUGGCGUCCGUUGCAGGGAUGUGCGGGGAGCGUCCACCCAUCCUGCUCCC
Get precursor sequence
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| Structure | 10 20 30 40 50 60
GGGUAGAGCCACAAUCU--| UUU UU A - ACUGCUCUG
GCUCCUUGC U CUGCAAC GG UGCCAGUUC U
CGAGGGGCG A GACGUUG CC GCGGUCAAG A
CCCUCGUCCUACCCACCUG^ UGU GG - U GUGUCUUUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Star sequence |
Ami-Mir-9613_5p* |
| mirBase accession | MIMAT0038370 |
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| Sequence |
0- UUCUGCAACAGGUGCCAGUUC -21
Get sequence
|
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| Mature sequence |
Ami-Mir-9613_3p |
| mirBase accession | MIMAT0038371 |
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| Sequence |
43- ACUGGCGUCCGUUGCAGGGAU -64
Get sequence
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