| MirGeneDB ID | Aqu-Mir-2021 |
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| Family name |
MIR-2021 (all species) |
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| Seed |
GGUGGUC |
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| Species |
Amphimedon (Amphimedon queenslandica) |
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| MiRBase ID |
aqu-mir-2021
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
Demospongiae
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| Node of Origin (family) |
Demospongiae
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Genome context
(GCF_000090795.1_v1.0_SPONGE) |
NW_003546453.1: 134191-134316 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUCGUAGUGUCUGGAGUGUUGUUGAUGUCCAUGGAAUAUCGGCACCCAUCCAGUUAAAACCUUCAACGAUCCACUCGUGCAGCUAUGGGUCCCUAGACUAGCACCAGUGGGUGAUUGUGUCAGGAGGUGUGUGAUGGUGGUCGGUGUUUCGUGGACACCAACAAUGCAAGGACAAGUCACUGGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80 90
AGUCGUAGUGUCUGGAGU--| A AC CAGUUAAAACCUUCAACGAUCCACUCGUGCAGCUAUGGGU
GUUGUUG UGUCCAUGGAAUAUCGGC CCAUC C
UAACAAC ACAGGUGCUUUGUGGCUG GGUAG C
GAGGUCACUGAACAGGAACG^ C GU UGUGUGGAGGACUGUGUUAGUGGGUGACCACGAUCAGAUC
180 170 160 150 140 130 120 110 100 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
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| Star sequence |
Aqu-Mir-2021_5p* |
| mirBase accession | MIMAT0009753 |
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| Sequence |
0- CAUGGAAUAUCGGCACCCAUC -21
Get sequence
|
|---|
| Mature sequence |
Aqu-Mir-2021_3p |
| mirBase accession | MIMAT0009754 |
|---|
| Sequence |
105- UGGUGGUCGGUGUUUCGUGGA -126
Get sequence
|
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