| MirGeneDB ID | Asu-Mir-5357 |
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| Family name |
MIR-5357 (all species) |
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| Seed |
AUGGACA |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-5357
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A.suum
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| Node of Origin (family) |
A.suum
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold420: 529272-529329 [-]
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Precursor
(pre-Mir +30nt flank) |
ACGCCGCUCUCACCCUUCUACUCGACUCCUCACCCGAAUCGUUGUUCAUUUGUAUUGCUUGCCUCAAAUGGACAACGAUUUGGGUGAGGAGUUGAGCAGAAUUAUCUCCAGUGAGAUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACGCCGCUCUCACCCUU--| A UAUUG
CU CUCGACUCCUCACCCGAAUCGUUGUUCAUUUG C
GA GAGUUGAGGAGUGGGUUUAGCAACAGGUAAAC U
AUAGAGUGACCUCUAUUAA^ C UCCGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-5357_5p* |
| mirBase accession | MIMAT0021576 |
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| Sequence |
0- CACCCGAAUCGUUGUUCAUUUG -22
Get sequence
|
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| Mature sequence |
Asu-Mir-5357_3p |
| mirBase accession | MIMAT0021577 |
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| Sequence |
36- AAUGGACAACGAUUUGGGUGAG -58
Get sequence
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