| MirGeneDB ID | Asu-Mir-5359 |
|---|
| Family name |
MIR-5359 (all species) |
|---|
| Seed |
CUGGGAU |
|---|
| Species |
Large roundworm (Ascaris suum) |
|---|
| MiRBase ID |
asu-mir-5359
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A.suum
|
|---|
| Node of Origin (family) |
A.suum
|
|---|
Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold3: 295177-295234 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGAGAGCGUGAAAGAUGCGACAAUGUGUGGUCUGGGAUUGUCUAUAUUGGUAAAAGUGAAUGCAUACCAAUAUCCACAAUCCUUGAGCAGACAAAUGUCAUGCCGCUUUAUUACCGCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGAGAGCGUGAAAGAUGC- A-| G G U CU AAAGU
GACA UGU UG UC GGGAUUGU AUAUUGGUA G
CUGU ACA AC AG UCCUAACA UAUAACCAU A
GCGCCAUUAUUUCGCCGUA AA^ G G U CC ACGUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Asu-Mir-5359_5p |
| mirBase accession | MIMAT0021580 |
|---|
| Sequence |
0- UCUGGGAUUGUCUAUAUUGGUA -22
Get sequence
|
|---|
| Star sequence |
Asu-Mir-5359_3p* |
| mirBase accession | MIMAT0021581 |
|---|
| Sequence |
36- CCAAUAUCCACAAUCCUUGAGC -58
Get sequence
|
|---|
