| MirGeneDB ID | Asu-Mir-5363 |
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| Family name |
MIR-5363 (all species) |
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| Seed |
UGGGCAA |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-5363
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A.suum
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| Node of Origin (family) |
A.suum
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold89: 139857-139915 [-]
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Precursor
(pre-Mir +30nt flank) |
CACCCAUCGUCCAUAGCGAGUCGUACGCUGAUGGGCAAAGUUUCUGAACCGUGUUGUGUUCAAGGCUAAACGGUUUGGCACUUGCCCAGCACUGUAUGACCGAUUGCCUCGGUUUUGAA
Get precursor sequence
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| Structure | 10 20 30 40 50 60
CACCCAUCGUCCAUAGC-|A C A A UU UG GUUGUGUU
G GUCGUACG UG UGGGCAA GU C AACCGU \
C CAGUAUGU AC ACCCGUU CA G UUGGCA C
AAGUUUUGGCUCCGUUAG^- C G - C- GU AAUCGGAA
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Mature sequence |
Asu-Mir-5363_5p |
| mirBase accession | MIMAT0021588 |
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| Sequence |
0- AUGGGCAAAGUUUCUGAACCGUGU -24
Get sequence
|
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| Star sequence |
Asu-Mir-5363_3p* |
| mirBase accession | MIMAT0021589 |
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| Sequence |
39- ACGGUUUGGCACUUGCCCAG -59
Get sequence
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