| MirGeneDB ID | Asu-Novel-1 |
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| Family name |
ASU-NOVEL-1 (all species) |
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| Seed |
CUUCGAC |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A.suum
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| Node of Origin (family) |
A.suum
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold122: 2002114-2002167 [+]
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Precursor
(pre-Mir +30nt flank) |
UGCGCAUUCUGGCAGCACCUCGCGAGGUGUUCUUCGACAGUAUGGCCAAAGCUGGAAACAAGCUGCAGCCGGCUGUCGAAAAAUACCUAGGAGGCUUUUUACAAAGCGCUGUAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGCGCAUUCUGGCAGCA---| GCG C A CAA GGA
CCUC AGGUGUU UUCGACAGU UGGC AGCU \
GGAG UCCAUAA AAGCUGUCG GCCG UCGA A
GAUGUCGCGAAACAUUUUUC^ GA- A - ACG ACA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Mature sequence |
Asu-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- UCUUCGACAGUAUGGCCAAAGCU -23
Get sequence
|
|---|
| Star sequence |
Asu-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
33- UGCAGCCGGCUGUCGAAAAAU -54
Get sequence
|
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