MirGeneDB ID | Asu-Novel-4 |
---|---|
Family name | ASU-NOVEL-4 (all species) |
Seed | ACAGUCU |
Species | Large roundworm (Ascaris suum) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | A.suum |
Node of Origin (family) | A.suum |
Genome context (ASU_PRJNA80881_plustraces) |
Scaffold656: 229799-229855 [+] |
Precursor (pre-Mir +30nt flank) | CUGGCCGGUAAGGUGAAGUUCAGUCCGCUGUACAGUCUCGAGGACGAACUAUGUGCAGGAGGACAUUUUCAUCCUCGAGACUGUGCAACGAACUGAACUUGUUUCCUUUGACAGAAUGet precursor sequence |
Structure | 10 20 30 40 50 CUGGCCGGUAAGGUGAA--| C C C CU UGCA GUUCAGU CG UGUACAGUCUCGAGGA GAA AUG G CAAGUCA GC ACGUGUCAGAGCUCCU CUU UAC G UAAGACAGUUUCCUUUGUU^ A A A U- AGGA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Asu-Novel-4_5p |
mirBase accession | None |
Sequence |
0- UACAGUCUCGAGGACGAACUAUG -23
Get sequence
|
Star sequence | Asu-Novel-4_3p* |
mirBase accession | None |
Sequence |
35- UUUUCAUCCUCGAGACUGUGCA -57
Get sequence
|