| MirGeneDB ID | Asu-Novel-4 |
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| Family name |
ASU-NOVEL-4 (all species) |
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| Seed |
ACAGUCU |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A.suum
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| Node of Origin (family) |
A.suum
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold656: 229799-229855 [+]
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Precursor
(pre-Mir +30nt flank) |
CUGGCCGGUAAGGUGAAGUUCAGUCCGCUGUACAGUCUCGAGGACGAACUAUGUGCAGGAGGACAUUUUCAUCCUCGAGACUGUGCAACGAACUGAACUUGUUUCCUUUGACAGAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUGGCCGGUAAGGUGAA--| C C C CU UGCA
GUUCAGU CG UGUACAGUCUCGAGGA GAA AUG G
CAAGUCA GC ACGUGUCAGAGCUCCU CUU UAC G
UAAGACAGUUUCCUUUGUU^ A A A U- AGGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Mature sequence |
Asu-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UACAGUCUCGAGGACGAACUAUG -23
Get sequence
|
|---|
| Star sequence |
Asu-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UUUUCAUCCUCGAGACUGUGCA -57
Get sequence
|
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