| MirGeneDB ID | Ava-Novel-1 |
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| Family name |
AVA-NOVEL-1 (all species) |
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| Seed |
UUGGCAC |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
A. vaga
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 8323034-8323098 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAUGAUUUAUUCCAAGUGAAUUAUCGUUUUUUGGCACAAAUUGAAAUUCAUUUUGUUAAUAAUGAUAUCGAUGAGUUUCAUAUUGUGUCGAAAUCGAUAAAUUUAAAACGGAUUUUACACAUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAUGAUUUAUUCCAAG-- -| UU AU UUGUUAAU
UGAA UUAUCG UUUUGGCACAA UGAAAUUCAUU \
AUUU AAUAGC AAAGCUGUGUU ACUUUGAGUAG A
UUUACACAUUUUAGGCAAA A^ U- AU CUAUAGUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
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| Mature sequence |
Ava-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- UUUGGCACAAAUUGAAAUUCAUU -23
Get sequence
|
|---|
| Star sequence |
Ava-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- UGAGUUUCAUAUUGUGUCGAAAU -65
Get sequence
|
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