| MirGeneDB ID | Ava-Novel-10-P1 |
|---|
| Family name |
AVA-NOVEL-10 (all species) |
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| Seed |
AUCUGAC |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Novel-10-P2
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
A. vaga
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075494.1: 14448415-14448475 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGAAGAAUGAAAACCGAUUUGUCGUCUUGAAUCUGACUAGUUUUGCAAUCUGCUCGAUAAUAAAGUGCAGAUGCUGGCUUUUCAGAUACCUAACGCAAAUCGGAAACGACGAUUAAAUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUGAAGAAUGAAAACCG---| U CUUGA CU UU A UCGAUA
AUUUG CGU AUCUGA AGUU GCA UCUGC \
UAAAC GCA UAGACU UCGG CGU AGACG A
ACUAAAUUAGCAGCAAAGGC^ - AUCCA UU U- - UGAAAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ava-Novel-10-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAUCUGACUAGUUUUGCAAUCUGC -24
Get sequence
|
|---|
| Star sequence |
Ava-Novel-10-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- AGAUGCUGGCUUUUCAGAUACC -61
Get sequence
|
|---|
