| MirGeneDB ID | Ava-Novel-4 |
|---|
| Family name |
AVA-NOVEL-4 (all species) |
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| Seed |
AACCUUG |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
A. vaga
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 11524721-11524813 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUCGUUUGAACUUUAUCGAAUUUAGUAAAUAGCUCAUGUAAUCAAGGUUACGCUAUGAAGAAGACGAAAAUGUUUAUAUACUUUGUCUUUGUUCAUCACCGCAACCUUGAUCACAUGAGCUAUUAACUUUUUUCGUAAAGAUUUUAUCUACAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70
AUCGUUUGAACUUUAUC--| UUU A A A CUAUGAAGAAGACGAAAAUGUUU
GAA AGU AAUAGCUCAUGU AUCAAGGUU CG \
CUU UCA UUAUCGAGUACA UAGUUCCAA GC A
UACAUCUAUUUUAGAAAUG^ UUU A C C CACUACUUGUUUCUGUUUCAUAU
150 140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Ava-Novel-4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCUCAUGUAAUCAAGGUUACG -22
Get sequence
|
|---|
| Mature sequence |
Ava-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
71- CAACCUUGAUCACAUGAGCUAU -93
Get sequence
|
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